rs55810043 chr12:26798400 T>C
- Sequence
gcttgtcatccttcactagcgccc[T/C]ctgacatgtatcataatttataca
- ASB in cell types
- GM19239 (male B-cells lymphoblastoid cell line) RPMI8226 (Plasma cell myeloma) epithelial cell of prostate
- ASB for transcription factors
- CTCF_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.65 | 2.50 | 1.50 | 0.67 | Weak Concordant | |||
| IKZF1_HUMAN | 2.28 | n/a | 2.00 | n/a | n/a |
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Motif analysis
