rs55811039 chr1:36374863 G>A
- Sequence
gaagaggagattgcaacaagggag[G/A]tcctggcatgggcatgtgactaag
- ASB in cell types
- K562 (myelogenous leukemia) breast tumor monocytes from periferal blood 22RV1 (prostate carcinoma)
- ASB for transcription factors
- ESR1_HUMAN PRD10_HUMAN SRBP2_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 2.64 | n/a | 2.00 | 1.52 | Weak Discordant | |||
| PRD10_HUMAN | 2.51 | -2.35 | 1.00 | n/a | n/a | |||
| SRBP2_HUMAN | 1.65 | -0.73 | 3.00 | n/a | No Hit | |||
| ANDR_HUMAN | 2.60 | -1.82 | 2.00 | n/a | No Hit |
Items per page:
1 – 4 of 4
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood