rs55816191 chr11:68495511 G>T
- Sequence
tctcatttttctctcatcccgcta[G/T]acctaggcaaccactactgtactt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) SUP-B15 (Childhood B acute lymphoblastic leukemia)
- ASB for transcription factors
- IKZF1_HUMAN GCR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | 2.68 | -0.59 | 1.17 | n/a | n/a | |||
| GCR_HUMAN | 2.36 | -2.38 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Esophagus_Muscularis, Nerve_Tibial, Ovary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood