rs55823720 chr6:107028202 C>T
- Sequence
ggcgccggcggaaggggcggggcg[C/T]agataggggtagcctggaggcctg
- ASB in cell types
- CD34+ hematopoietic stem cells-derived proerythroblasts MCF7L-P(immortalized breast epithelial cell line)
- ASB for transcription factors
- GATA1_HUMAN ZFX_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GATA1_HUMAN | 3.16 | n/a | 2.00 | -2.25 | Concordant | |||
| ZFX_HUMAN | -0.85 | 1.71 | 1.00 | n/a | No Hit | |||
| CTCF_HUMAN | 0.37 | 0.66 | 1.32 | n/a | No Hit |
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Motif analysis
