rs55823731 chr11:134272626 G>A

Sequence
gctgtcaacagcctgctgtgtgac[G/A]tcactgaaagcctctgtgctctag
ASB in cell types
HEK293 (embryonic kidney) HepG2 (hepatoblastoma) HCASMC (Human coronary artery smooth muscle cells)
ASB for transcription factors
ATF7_HUMAN ATF2_HUMAN CREB1_HUMAN ZN629_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ATF7_HUMAN 3.75 -3.42 9.0·10-111.00 1.00 -1.23 Weak Concordant
ATF2_HUMAN 2.57 -3.29 3.2·10-51.00 3.00 1.04 Weak Discordant
CREB1_HUMAN 1.94 -3.01 1.3·10-31.00 1.33 -6.01 Concordant
ZN629_HUMAN 2.49 -2.14 5.6·10-31.00 1.00 n/a n/a
ZN660_HUMAN 2.90 -2.88 0.011.00 1.00 n/a No Hit
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Motif analysis

ATF7_HUMAN Weak Concordant
ATF7_HUMAN pic

Genetic associations

GTEx eQTL Artery_Aorta,  Artery_Tibial,  Brain_Hypothalamus,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Thyroid,  Whole_Blood

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