rs55825296 chr17:43917746 C>A
- Sequence
tagggccagtggctgcgacaggga[C/A]ctgatacaacagtgcgttaaataa
- ASB in cell types
- bipolar neuron IPSC-derived bipolar neuron GM23338 GM19099 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN EZH2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.28 | -0.53 | 1.45 | n/a | No Hit | |||
| EZH2_HUMAN | 2.38 | -2.07 | 1.00 | n/a | n/a |
Items per page:
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Amygdala, Brain_Cortex, Brain_Frontal_Cortex_BA9, Colon_Sigmoid, Skin_Sun_Exposed_Lower_leg