rs55829937 chr19:50333592 T>A
- Sequence
cggcgtggactacaacgaccgtga[T/A]gctccacggagccaggagcctttg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) HUES64 (embryonic stem cells) MOLT-4 (Adult T acute lymphoblastic leukemia) CD4+ T-cells
- ASB for transcription factors
- THA11_HUMAN ZN143_HUMAN BCL6_HUMAN ANDR_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| THA11_HUMAN | 3.54 | -1.48 | 1.33 | n/a | n/a | |||
| ZN143_HUMAN | 0.79 | -1.33 | 1.50 | -1.43 | Weak Concordant | |||
| BCL6_HUMAN | 2.67 | -0.18 | 1.83 | n/a | No Hit | |||
| ANDR_HUMAN | 2.12 | -1.15 | 1.67 | n/a | No Hit | |||
| COT1_HUMAN | 2.38 | -2.04 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood