rs55830103 chr20:58890888 T>G
- Sequence
ctcgcctcgctttttccacactcc[T/G]gctctctggctctctgtgtctctc
- ASB in cell types
- 22RV1 (prostate carcinoma) HepG2 (hepatoblastoma) breast tumor
- ASB for transcription factors
- ANDR_HUMAN TYY1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.56 | -1.59 | 2.00 | n/a | No Hit | |||
| TYY1_HUMAN | -0.29 | 1.65 | 1.60 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid