rs55830819 chr3:197034920 G>T
- Sequence
tcttgctgacgggttgtggtgtga[G/T]cacctgcagtagtgtgatgtcaga
- ASB in cell types
- keratinocytes MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- SNAI2_HUMAN CREB1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | n/a | 3.51 | 1.50 | -1.12 | Weak Discordant | |||
| CREB1_HUMAN | 2.77 | n/a | 1.50 | n/a | No Hit |
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Motif analysis
