rs55836023 chr11:85855114 A>G

Sequence
ggttgccttggaaatgcagggcgc[A/G]gcagccgctgcagtggagccggta
ASB in cell types
CD14+ monocytes MCF10A (breast epithelial cells) LUHMES (lund human mesencephalic cells) transverse colon
ASB for transcription factors
STAT1_HUMAN SPI1_HUMAN STAG2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN 3.27 n/a 2.9·10-61.00 2.00 n/a No Hit
SPI1_HUMAN 1.74 0.21 5.5·10-51.00 2.06 n/a No Hit
STAG2_HUMAN 2.60 0.76 8.9·10-40.53 1.67 n/a n/a
Items per page:
1 – 3 of 3

Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Cerebellar_Hemisphere,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Nucleus_accumbens_basal_ganglia,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Minor_Salivary_Gland,  Nerve_Tibial,  Ovary,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Testis,  Thyroid,  Vagina

Download