rs55841721 chr5:78510642 G>A
- Sequence
tagggagcaccatggaaggaggcg[G/A]ccagtgccaggtcctgctcccaac
- ASB in cell types
- Kasumi-1 (acute myeloblastic leukemia)
- ASB for transcription factors
- CTCF_HUMAN MTG8_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.90 | 0.71 | 1.06 | n/a | No Hit | |||
| MTG8_HUMAN | 2.46 | -2.18 | 1.00 | n/a | n/a | |||
| ESR1_HUMAN | 2.21 | -4.44 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Left_Ventricle, Lung, Nerve_Tibial, Ovary, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid