rs55848260 chr19:44577121 A>G
- Sequence
gtgtcaagggaggttcctcctaga[A/G]cctgcagagggagctcggcctatg
- ASB in cell types
- OCI-LY7 (diffuse large B-cell lymphoma) GBM39 (Human brain tumor) ID00014 (lymphoblastoid cell, DiGeorge syndrome) GM19240 (B cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.50 | 1.16 | 1.30 | 0.60 | Weak Concordant | |||
| SMC3_HUMAN | 0.18 | 1.15 | 1.31 | n/a | n/a |
Items per page:
1 – 2 of 2
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Cells_Cultured_fibroblasts, Lung, Muscle_Skeletal, Nerve_Tibial, Testis, Thyroid, Whole_Blood