rs55866394 chr5:2038636 C>A
- Sequence
ttgacttgggcatcgatcgccgcg[C/A]ccgcccggggccgcacctccgccg
- ASB in cell types
- breast tumor A549 (lung carcinoma) K562 (myelogenous leukemia) LUHMES (lund human mesencephalic cells)
- ASB for transcription factors
- ESR1_HUMAN ANDR_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 3.30 | n/a | 2.00 | 1.37 | Weak Discordant | |||
| ANDR_HUMAN | 2.00 | 0.04 | 2.00 | n/a | No Hit | |||
| RAD21_HUMAN | 0.96 | 0.27 | 1.72 | n/a | n/a |
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Motif analysis
