rs55868704 chr6:88125359 C>T
- Sequence
aggacggttacagaacaggtgact[C/T]atgatgattcaggtcagagcacat
- ASB in cell types
- K562 (myelogenous leukemia) HCASMC (Human coronary artery smooth muscle cells)
- ASB for transcription factors
- ATF3_HUMAN TIF1A_HUMAN JUND_HUMAN ARI1B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF3_HUMAN | 3.33 | n/a | 2.00 | 0.58 | Weak Discordant | |||
| TIF1A_HUMAN | 3.34 | -0.69 | 2.00 | n/a | n/a | |||
| JUND_HUMAN | 2.26 | -3.85 | 1.50 | -2.49 | Concordant | |||
| ARI1B_HUMAN | 2.29 | n/a | 2.00 | n/a | n/a | |||
| JUN_HUMAN | 2.31 | -1.82 | 1.50 | -5.55 | Concordant |
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Motif analysis
