rs55871547 chr7:2314717 C>G

Sequence
ctcgcaggtgcactacctcaggcg[C/G]aagcctgcacccaccgcaccctca
ASB in cell types
pancreas macrophages form periferal blood
ASB for transcription factors
CTCF_HUMAN ESR1_HUMAN TYY1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.09 1.75 1.007.5·10-4 1.32 n/a No Hit
ESR1_HUMAN 2.46 -1.50 0.021.00 2.00 n/a No Hit
TYY1_HUMAN n/a 1.96 1.000.04 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Artery_Aorta,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

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