rs55873785 chr1:228165950 G>C

Sequence
gtcctggtggcgacccaacggccg[G/C]agcggcctgggcctgcttccggct
ASB in cell types
HEK293 (embryonic kidney) neutrophils breast tumor CD14+ monocytes
ASB for transcription factors
CBP_HUMAN STAG1_HUMAN RBBP5_HUMAN STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CBP_HUMAN 2.24 -2.06 0.021.00 1.00 n/a n/a
STAG1_HUMAN 1.38 -0.06 0.031.00 1.00 n/a n/a
RBBP5_HUMAN 1.59 -1.23 0.041.00 3.00 n/a n/a
STAT1_HUMAN 1.47 0.74 0.041.00 1.40 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Nucleus_accumbens_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Kidney_Cortex,  Lung,  Minor_Salivary_Gland,  Muscle_Skeletal,  Nerve_Tibial,  Ovary,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

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