rs55874825 chr12:55676884 C>T

Sequence
ttgcttaacaacaggaataagttc[C/T]gagaaatgcatcgttaggtgattt
ASB in cell types
CD14+ monocytes THP-1 (acute monocytic leukemia)
ASB for transcription factors
STAT1_HUMAN CEBPA_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN 2.28 -0.55 1.9·10-41.00 3.00 -0.53 Weak Concordant
CEBPA_HUMAN 1.47 0.19 0.031.00 1.00 n/a No Hit
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Motif analysis

STAT1_HUMAN Weak Concordant
STAT1_HUMAN pic

Genetic associations

EMBL-EBI response to amphetamines
GRASP subjective response to d-amphetamine and the risk for amphetamine addiction
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Thyroid,  Whole_Blood

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