rs55878016 chr5:9156424 G>T
- Sequence
gtcagccacaggccctgcaaggag[G/T]tccccatgaggcaccagcagaggg
- ASB in cell types
- GBM39 (Human brain tumor)
- ASB for transcription factors
- CTCF_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.22 | 1.86 | 1.88 | n/a | No Hit | |||
| SMC3_HUMAN | -4.99 | 2.91 | 2.00 | n/a | n/a |
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