rs55936445 chr7:7789619 T>C
- Sequence
actcgttaaacaaaataccccttc[T/C]cccctccccacagaccctggaaac
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) MS-1 (Small cell lung carcinoma)
- ASB for transcription factors
- STAG1_HUMAN ATF7_HUMAN ELF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | -0.48 | 1.68 | 1.08 | n/a | n/a | |||
| ATF7_HUMAN | -1.70 | 2.10 | 1.00 | n/a | No Hit | |||
| ELF1_HUMAN | 2.14 | -1.58 | 1.00 | 3.78 | Discordant |
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Motif analysis
