rs56018454 chr19:2518388 T>C
- Sequence
cacttcaaccagggctttctctct[T/C]ttcagcccgaaggaatgctttgaa
- ASB in cell types
- MOLT-4 (Adult T acute lymphoblastic leukemia) BEAS-2B (bronchial epithelium) HCT-116 (colon carcinoma)
- ASB for transcription factors
- GCR_HUMAN CDK8_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 0.49 | 1.39 | 1.00 | n/a | No Hit | |||
| CDK8_HUMAN | 0.35 | 2.15 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia