rs560286119 chr10:34469788 T>G
- Sequence
acacagcaagaaagggactttata[T/G]ggcacataatgtgttgaatgtttt
- ASB in cell types
- LNCaP (prostate carcinoma) LNCaP95 LNCaP C4-2 (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN A2NVP9_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | -0.29 | 1.92 | 1.75 | 0.75 | Weak Concordant | |||
| A2NVP9_HUMAN | -3.45 | 2.34 | 1.50 | n/a | n/a | |||
| FOXA1_HUMAN | -0.31 | 1.34 | 1.40 | n/a | No Hit |
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Motif analysis
