rs562939112 chr1:40374602 T>C
- Sequence
tgcgtgcgtgcgtgcgtgcgtgtg[T/C]gtgtgtgtgtgtgtgtgtgtgtga
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) MCF7 (Invasive ductal breast carcinoma) neural cell
- ASB for transcription factors
- TRI22_HUMAN PKNX1_HUMAN ARNT_HUMAN TBX21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TRI22_HUMAN | 2.71 | -2.37 | 1.00 | n/a | n/a | |||
| PKNX1_HUMAN | 2.83 | -2.82 | 1.00 | n/a | No Hit | |||
| ARNT_HUMAN | 1.12 | -1.12 | 1.00 | 1.73 | Weak Discordant | |||
| TBX21_HUMAN | 2.02 | -1.78 | 1.00 | n/a | No Hit | |||
| RAD21_HUMAN | 2.46 | -2.49 | 1.00 | n/a | n/a |
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Motif analysis
