rs56308014 chr5:5281515 C>T
- Sequence
aatctattaagggaaacttcattg[C/T]ataacacaaatataatgtgtaaca
- ASB in cell types
- LNCaP (prostate carcinoma) MSC (mesenchymal stem cells)
- ASB for transcription factors
- FOXA1_HUMAN CEBPB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.42 | -0.97 | 1.45 | -0.39 | Weak Concordant | |||
| CEBPB_HUMAN | 2.16 | -1.90 | 1.33 | -3.25 | Concordant |
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Motif analysis
