rs56309145 chr2:11345013 G>C
- Sequence
ccgggcccagcgcaccgtgcgctg[G/C]gggggagcccggccgcgccccccg
- ASB in cell types
- BIN-67 (Ovarian small cell carcinoma, hypercalcemic type) HEK293 (embryonic kidney) CRC107 (colorectal cancer metastatic stem cells) HepG2 (hepatoblastoma)
- ASB for transcription factors
- RFOX2_HUMAN ZIC5_HUMAN SMRC1_HUMAN SIN3A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RFOX2_HUMAN | 2.41 | -4.87 | 2.00 | n/a | n/a | |||
| ZIC5_HUMAN | 0.05 | 2.62 | 1.00 | 5.14 | Concordant | |||
| SMRC1_HUMAN | 0.18 | 1.64 | 1.05 | n/a | n/a | |||
| SIN3A_HUMAN | -0.25 | 2.18 | 1.00 | n/a | n/a | |||
| GLIS1_HUMAN | -0.83 | 2.00 | 1.25 | 3.58 | Concordant |
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Motif analysis
