rs564891557 chr15:90954575 C>T
- Sequence
gagcgcagcctcccaaagtgtcgc[C/T]tgggcgacacagcgagaccctatc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- RFX1_HUMAN SMCA5_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RFX1_HUMAN | 3.09 | n/a | 1.75 | -1.02 | Weak Concordant | |||
| SMCA5_HUMAN | 2.35 | 0.04 | 1.33 | n/a | n/a |
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Motif analysis
