rs568171478 chr10:6108874 C>T
- Sequence
ctgcaagcctgcctggctctgtca[C/T]ctgaggccgcacctggatctcaga
- ASB in cell types
- GM19240 (B cells Lymphoblastoid Cell Lines) GM19239 (male B-cells lymphoblastoid cell line) LNCaP (prostate carcinoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.55 | -0.04 | 1.20 | -3.38 | Concordant | |||
| STAG1_HUMAN | 1.51 | -0.58 | 1.24 | n/a | n/a |
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Motif analysis
