rs56891470 chr17:43361100 C>T
- Sequence
aggtacgcgcgatgagcttaaata[C/T]gcgagtactaagagaccgtgaaac
- ASB in cell types
- TTC-1240 (Rhabdoid tumor of the kidney) pancreas SYO-1(Biphasic synovial sarcoma) renal cortex
- ASB for transcription factors
- CTCF_HUMAN SSXT_HUMAN SNF5_HUMAN ZBED1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.55 | 1.46 | 1.10 | n/a | No Hit | |||
| SSXT_HUMAN | -0.87 | 2.00 | 1.10 | n/a | n/a | |||
| SNF5_HUMAN | -0.98 | 1.86 | 1.00 | n/a | n/a | |||
| ZBED1_HUMAN | -3.05 | 2.05 | 1.50 | n/a | No Hit | |||
| PEBB_HUMAN | -2.69 | 1.75 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood