rs56930149 chr20:32288383 G>A
- Sequence
ttgcacctgtactcccaactactc[G/A]ggaagctgaggcaagttcaagccc
- ASB in cell types
- HepG2 (hepatoblastoma)
- ASB for transcription factors
- ETV5_HUMAN RARA_HUMAN RXRB_HUMAN SKI_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ETV5_HUMAN | -3.21 | 3.37 | 1.00 | 3.86 | Concordant | |||
| RARA_HUMAN | -3.04 | 2.21 | 1.33 | n/a | No Hit | |||
| RXRB_HUMAN | -1.93 | 2.32 | 1.00 | n/a | No Hit | |||
| SKI_HUMAN | -1.34 | 1.34 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood