rs572450133 chr5:170389325 A>C
- Sequence
ctttctgcctggacccccgccccc[A/C]ccccaaaagaggccacagagcttc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) SEM (childhood B acute lymphoblastic leukemia)
- ASB for transcription factors
- SRF_HUMAN ERG_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SRF_HUMAN | 3.35 | -3.01 | 1.00 | -0.59 | Weak Concordant | |||
| ERG_HUMAN | 3.35 | -4.79 | 1.33 | n/a | No Hit |
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Motif analysis
