rs57310340 chr1:8424469 A>G
- Sequence
acccttgctgagatatgactcatc[A/G]ttgtcaattttcaatataattcat
- ASB in cell types
- 22RV1 (prostate carcinoma) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- ANDR_HUMAN REQU_HUMAN SRF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.91 | n/a | 1.33 | n/a | No Hit | |||
| REQU_HUMAN | -1.77 | 2.32 | 1.00 | n/a | n/a | |||
| SRF_HUMAN | -1.63 | 2.19 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Cerebellar_Hemisphere, Breast_Mammary_Tissue, Nerve_Tibial, Whole_Blood