rs5761730 chr22:26756812 T>G
- Sequence
aaacagccacgaggtgtcgccctc[T/G]gcccgtggtatcctgacggcggcg
- ASB in cell types
- GM12891 (male B- cells lymphoblastoid cell line) THP-1 (acute monocytic leukemia) neural cell MDM(monocyte derived macrophages)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN STAG1_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.23 | 1.11 | 1.27 | -3.39 | Concordant | |||
| RAD21_HUMAN | 1.47 | 0.17 | 1.03 | n/a | n/a | |||
| STAG1_HUMAN | 1.79 | 0.34 | 1.23 | n/a | n/a | |||
| SMC3_HUMAN | 1.13 | -1.13 | 1.00 | n/a | n/a | |||
| FOXA1_HUMAN | 1.51 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
