rs5761731 chr22:26756823 T>C
- Sequence
aggtgtcgccctctgcccgtggta[T/C]cctgacggcggcgggggcggccgg
- ASB in cell types
- GM12891 (male B- cells lymphoblastoid cell line) THP-1 (acute monocytic leukemia) MDM(monocyte derived macrophages) neural cell
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN STAG1_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.20 | 1.27 | 1.25 | -0.50 | Weak Concordant | |||
| RAD21_HUMAN | 1.39 | 0.22 | 1.03 | n/a | n/a | |||
| STAG1_HUMAN | 1.80 | 0.40 | 1.23 | n/a | n/a | |||
| SMC3_HUMAN | 1.02 | -1.02 | 1.00 | n/a | n/a | |||
| FOXA1_HUMAN | 1.77 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
