rs5769127 chr22:46739375 G>A
- Sequence
gtctatagggcgggaaccagccat[G/A]aatcattcctccctgggagcccag
- ASB in cell types
- pancreas MCF7 (Invasive ductal breast carcinoma) NCI-H2171 (small cell lung carcinoma) transverse colon
- ASB for transcription factors
- CTCF_HUMAN MNT_HUMAN MAX_HUMAN MYC_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.85 | -0.26 | 1.89 | n/a | No Hit | |||
| MNT_HUMAN | 3.25 | n/a | 1.00 | n/a | No Hit | |||
| MAX_HUMAN | 2.30 | -0.46 | 1.33 | n/a | No Hit | |||
| MYC_HUMAN | 2.09 | -1.49 | 1.25 | n/a | No Hit | |||
| RAD21_HUMAN | 1.61 | -0.06 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid, Whole_Blood