rs58110988 chr1:6393650 T>G
- Sequence
cgcgccggtgcggggaaggcccgc[T/G]agccgcggcagccgcgcccgaccc
- ASB in cell types
- primary B-CLL cells LNCaP C4-2B (prostate carcinoma) breast tumor
- ASB for transcription factors
- BRD4_HUMAN ZFX_HUMAN FOXA1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRD4_HUMAN | 1.78 | -0.20 | 1.80 | n/a | n/a | |||
| ZFX_HUMAN | 1.71 | -0.02 | 1.00 | n/a | No Hit | |||
| FOXA1_HUMAN | 2.34 | -0.09 | 1.71 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid