rs58136167 chr16:74666730 G>A
- Sequence
caatccaggaatcaggcgtgggga[G/A]gtttatcccgaagctagaggccca
- ASB in cell types
- K562 (myelogenous leukemia) MOLT-4 (Adult T acute lymphoblastic leukemia) HepG2 (hepatoblastoma) LNCaP C4-2B (prostate carcinoma)
- ASB for transcription factors
- SPT5H_HUMAN GABP1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPT5H_HUMAN | 0.92 | 0.53 | 1.20 | n/a | n/a | |||
| GABP1_HUMAN | 2.05 | 0.19 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adrenal_Gland, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood