rs58175598 chr3:192423208 T>C
- Sequence
tcttttttgttagagagccccctg[T/C]tgcataatttgtgtaattaaagta
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) SYO-1(Biphasic synovial sarcoma) RWPE2 PC9 (lung adenocarcinoma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.36 | 2.43 | 1.28 | 2.42 | Concordant | |||
| STAG1_HUMAN | -1.70 | 1.66 | 1.50 | n/a | n/a | |||
| RAD21_HUMAN | -0.18 | 1.19 | 1.64 | n/a | n/a |
Items per page:
1 – 3 of 3
Motif analysis
