rs58400165 chr3:196528838 C>G
- Sequence
tttccactcagggcagcgccgccg[C/G]ggtggttccgccctgtcgggctca
- ASB in cell types
- pancreas Kelly (neuroblastoma) macrophages form periferal blood MDA-MB-157 (triple negative breast carcinoma)
- ASB for transcription factors
- CTCF_HUMAN SPI1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.63 | 1.34 | 1.94 | n/a | No Hit | |||
| SPI1_HUMAN | 1.95 | 0.24 | 2.06 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum