rs58406433 chr8:143547706 A>G
- Sequence
gaaacagaagtaagataaatagcg[A/G]gacgaccttggcgccaccacctgg
- ASB in cell types
- K562 (myelogenous leukemia) MS-1 (Small cell lung carcinoma) 2588 (Lymphoblastoid Cell Lines) adult erythroblasts
- ASB for transcription factors
- CTCF_HUMAN RBBP5_HUMAN IKZF1_HUMAN NCOR1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 3.77 | 1.98 | 1.17 | n/a | No Hit | |||
| RBBP5_HUMAN | 4.16 | n/a | 2.00 | n/a | n/a | |||
| IKZF1_HUMAN | 2.13 | n/a | 2.00 | n/a | n/a | |||
| NCOR1_HUMAN | 2.83 | -4.50 | 2.00 | n/a | n/a | |||
| EP400_HUMAN | 2.16 | n/a | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood