rs58486577 chr2:176140887 C>T
- Sequence
ctagggccgttccgggttggcggg[C/T]cacctcgctttctccgcgctcccg
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) HepG2 (hepatoblastoma) esophagus squamous epithelium
- ASB for transcription factors
- ZNF24_HUMAN COT1_HUMAN VEZF1_HUMAN GABP1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZNF24_HUMAN | -0.23 | 2.15 | 1.17 | n/a | No Hit | |||
| COT1_HUMAN | -1.66 | 2.27 | 1.00 | n/a | No Hit | |||
| VEZF1_HUMAN | -1.38 | 2.04 | 1.00 | n/a | No Hit | |||
| GABP1_HUMAN | -1.61 | 2.21 | 1.50 | n/a | n/a | |||
| KAISO_HUMAN | 2.31 | -0.22 | 1.00 | n/a | No Hit |
Items per page:
1 – 5 of 12
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Hippocampus, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Ovary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid