rs58506995 chr8:55923114 A>G

Sequence
agggtttgagcctcgggtgactgg[A/G]atggtgagaaaaaacaattttcag
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
IKZF1_HUMAN IKZF2_HUMAN BHE40_HUMAN MTA2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IKZF1_HUMAN -1.97 2.47 1.001.4·10-7 1.00 n/a n/a
IKZF2_HUMAN -1.55 1.67 1.004.8·10-5 1.00 n/a n/a
BHE40_HUMAN -3.91 2.62 1.009.3·10-4 1.33 n/a No Hit
MTA2_HUMAN -2.34 2.70 1.005.5·10-3 1.00 n/a n/a
ENL_HUMAN -2.48 2.73 1.000.01 1.00 n/a n/a
Items per page:
1 – 5 of 6

Motif analysis

No data available

Genetic associations

GTEx eQTL Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Pituitary,  Skin_Sun_Exposed_Lower_leg

Download