rs58515841 chr2:190635992 A>T
- Sequence
caatcctcctacttcagcctcccc[A/T]ctaggtggaaccacaggcgtgtgc
- ASB in cell types
- GM19239 (male B-cells lymphoblastoid cell line) GM18526 (B – cells Lymphoblastoid Cell Lines) PANC1 (pancreatic ductal adenocarcinoma) GM17942 (lymphoblastoid cell)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 3.87 | -0.80 | 1.42 | -2.98 | Concordant | |||
| STAG1_HUMAN | 4.17 | -4.16 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Thyroid