rs58555365 chr8:73174467 G>C
- Sequence
cctcggctccctgctttcccagac[G/C]tccccctggtgtgggcctgtgtca
- ASB in cell types
- HMEC (human mammary epithelial cells) HCT-116 (colon carcinoma) WA01 (H1, human embryonic stem cells) CD34+ stem cells-derived erythroblasts
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN STAG2_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.20 | 0.37 | 1.48 | 3.21 | Discordant | |||
| RAD21_HUMAN | 1.20 | 0.45 | 1.94 | n/a | n/a | |||
| STAG2_HUMAN | 2.38 | -2.04 | 1.00 | n/a | n/a | |||
| STAG1_HUMAN | 0.58 | -0.09 | 1.00 | n/a | n/a | |||
| SMC1A_HUMAN | 2.07 | -0.19 | 1.67 | n/a | n/a |
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Motif analysis
