rs58575091 chr3:186827530 C>T
- Sequence
cgtgctcgtctagctcccgccgcc[C/T]ggcgaaggacctcgcgggacgggg
- ASB in cell types
- HepG2 (hepatoblastoma) upper lobe of left lung MOLT-4 (Adult T acute lymphoblastic leukemia) neural cell
- ASB for transcription factors
- CTCF_HUMAN SPT5H_HUMAN GABP1_HUMAN BRD2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.33 | 1.63 | 1.25 | 2.73 | Concordant | |||
| SPT5H_HUMAN | -0.53 | 1.60 | 1.00 | n/a | n/a | |||
| GABP1_HUMAN | -1.88 | 2.28 | 1.00 | n/a | n/a | |||
| BRD2_HUMAN | -0.23 | 1.11 | 1.17 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Brain_Cerebellum, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Nerve_Tibial, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Thyroid