rs58602839 chr6:166313485 G>C
- Sequence
gcttccctccatgccggggggggg[G/C]ggtcccaatttctttggtctcaag
- ASB in cell types
- K562 (myelogenous leukemia) thoracic aorta tibial nerve adrenal gland
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN MNT_HUMAN ARID2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.36 | 2.60 | 1.65 | 3.37 | Concordant | |||
| STAG1_HUMAN | -1.04 | 0.66 | 1.38 | n/a | n/a | |||
| MNT_HUMAN | -0.26 | 2.50 | 1.25 | n/a | No Hit | |||
| ARID2_HUMAN | -3.13 | 3.38 | 1.00 | n/a | n/a | |||
| REST_HUMAN | -1.75 | 1.75 | 1.00 | n/a | No Hit |
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Motif analysis
