rs58639682 chr12:118052616 G>T

Sequence
ggagttgtcacttaaatgacccag[G/T]gcaataacagcagccacaggccac
ASB in cell types
HepG2 (hepatoblastoma) HUVEC-C (HUVEC, umbilical vein endothelial cells) breast tumor
ASB for transcription factors
IRF2_HUMAN TF65_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IRF2_HUMAN -2.47 2.78 1.006.9·10-3 1.00 n/a No Hit
TF65_HUMAN 1.59 0.07 9.5·10-31.00 3.67 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Esophagus_Gastroesophageal_Junction,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

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