rs58658771 chr15:32709533 T>A
- Sequence
gtccaaagtccatcagctttgttt[T/A]ctttctctgtcacacgaacaagta
- ASB in cell types
- HepG2 (hepatoblastoma) MCF7 (Invasive ductal breast carcinoma) SNU-16 (Gastric adenocarcinoma) liver
- ASB for transcription factors
- HNF4A_HUMAN FOXA1_HUMAN FOXA3_HUMAN FOXA2_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HNF4A_HUMAN | -2.13 | 2.06 | 1.46 | n/a | No Hit | |||
| FOXA1_HUMAN | n/a | 3.51 | 2.00 | 6.48 | Concordant | |||
| FOXA3_HUMAN | n/a | 3.08 | 2.00 | 6.89 | Concordant | |||
| FOXA2_HUMAN | -4.74 | 2.76 | 1.50 | 6.57 | Concordant |
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Motif analysis
