rs58681483 chr17:59857293 A>G

Sequence
gtagattgaatagtaagggtggat[A/G]ggggaggggagttttcggggagat
ASB in cell types
MCF7 (Invasive ductal breast carcinoma) MCF7 WS8 cells
ASB for transcription factors
FOXA1_HUMAN SNF5_HUMAN GCR_HUMAN SMCA4_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 0.16 3.16 0.902.6·10-13 3.78 n/a No Hit
SNF5_HUMAN n/a 3.21 1.006.8·10-8 4.00 n/a n/a
GCR_HUMAN n/a 4.18 1.008.3·10-8 2.00 n/a No Hit
SMCA4_HUMAN -0.86 2.55 0.932.8·10-6 3.67 n/a n/a
ARI1A_HUMAN n/a 3.03 1.001.5·10-5 4.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

EMBL-EBI chronotype,  monocyte count
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Breast_Mammary_Tissue,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Lung,  Muscle_Skeletal,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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