rs58752549 chr9:129762773 T>G
- Sequence
gatacaagggtcatctctgcaact[T/G]cctgagttccatctcaactgcaac
- ASB in cell types
- HCC1954 (ductal breast carcinoma)
- ASB for transcription factors
- FOS_HUMAN SMAD3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOS_HUMAN | n/a | 1.20 | 1.50 | n/a | No Hit | |||
| SMAD3_HUMAN | n/a | 2.46 | 3.00 | 4.16 | Concordant |
Items per page:
1 – 2 of 2
Motif analysis
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Esophagus_Mucosa, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid