rs58834777 chr2:105398508 G>A

Sequence
ggcggacagcgtcacctccccgca[G/A]ccgccggctgggacccgcggccag
ASB in cell types
MDA-MB-231 (breast adenocarcinoma) RKO (colon carcinoma cell) BEAS-2B (bronchial epithelium)
ASB for transcription factors
CTCF_HUMAN GCR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.14 0.60 0.020.88 1.17 0.28 Weak Discordant
GCR_HUMAN 1.12 0.56 0.041.00 1.09 n/a No Hit
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Motif analysis

CTCF_HUMAN Weak Discordant
CTCF_HUMAN pic

Genetic associations

GTEx eQTL Cells_Cultured_fibroblasts,  Lung,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Whole_Blood

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