rs58844935 chr12:3753093 C>T
- Sequence
ctgtcaagcagccgcctgctccgc[C/T]cgactctttccgctccgagccgcg
- ASB in cell types
- CD34+ hematopoietic stem cells SUM159PT (Triple negative breast cancer)
- ASB for transcription factors
- TIF1B_HUMAN BRD2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TIF1B_HUMAN | 2.81 | 0.65 | 1.33 | n/a | n/a | |||
| BRD2_HUMAN | 2.02 | -1.67 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Coronary, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Spleen, Thyroid